The only sub-model which uses constraint based modeling is the metabolic sub-model. The other sub-models use different mathematical formalisms which aren't compatible with COBRA.
We do use the COBRA toolbox to output this sub-model to SBML (see: ). The SBML file is available at .
Procedure to generate a COBRA compatible submodel?
3 posts
• Page 1 of 1
Procedure to generate a COBRA compatible submodel?
by bebarker » Wed Apr 22, 2015 11:09 am
- bebarker
- Posts: 2
- Joined: Wed Apr 22, 2015 10:50 am
Re: Procedure to generate a COBRA compatible submodel?
by jonrkarr » Wed Apr 22, 2015 12:16 pm
- jonrkarr
- Posts: 6
- Joined: Fri Feb 06, 2015 7:56 pm
Re: Procedure to generate a COBRA compatible submodel?
by bebarker » Wed Apr 22, 2015 1:47 pm
Thanks - I appreciate the pointers and quick response (and also the fact that it is already a supported feature!), will try it out starting today.
- bebarker
- Posts: 2
- Joined: Wed Apr 22, 2015 10:50 am
3 posts
• Page 1 of 1
Who is online
Users browsing this forum: No registered users and 1 guest